A Peeriodical dedicated to the CPTAC 3 publications
Editor Felipe da Veiga Leprevost
The National Cancer Institute’s Clinical Proteomic Tumor Analysis Consortium (CPTAC) is a national effort to accelerate the understanding of the molecular basis of cancer through the application of large-scale proteome and genome analysis, or proteogenomics. Launched in 2011, CPTAC pioneered the integrated proteogenomic analysis of colorectal, breast and ovarian cancer to reveal new insights into these cancer types, such as identification of proteomic-centric subtypes, prioritization of driver mutations by correlative analysis of copy number alterations and protein abundance, and understanding cancer-relevant pathways through posttranslational modifications.
Proteogenomic Characterization of Endometrial Carcinoma (2020)
Yongchao Dou, Emily A. Kawaler, Daniel Cui Zhou, Marina A. Gritsenko, Chen Huang, Lili Blumenberg, Alla Karpova, Vladislav A. Petyuk, Sara R. Savage, Shankha Satpathy, Wenke Liu, Yige Wu, Chia-Feng Tsai, Bo Wen, Zhi Li, Song Cao, Jamie Moon, Zhiao Shi, MacIntosh Cornwell, Matthew A. Wyczalkowski, Rosalie K. Chu, Suhas Vasaikar, Hua Zhou, Qingsong Gao, Ronald J. Moore, Kai Li, Sunantha Sethuraman, Matthew E. Monroe, Rui Zhao, David Heiman, Karsten Krug, Karl Clauser, Ramani Kothadia, Yosef Maruvka, Alexander R. Pico, Amanda E. Oliphant, Emily L. Hoskins, Samuel L. Pugh, Sean J.I. Beecroft, David W. Adams, Jonathan C. Jarman, Andy Kong, Hui-Yin Chang, Boris Reva, Yuxing Liao, Dmitry Rykunov, Antonio Colaprico, Xi Steven Chen, Andrzej Czekański, Marcin Jędryka, Rafał Matkowski, Maciej Wiznerowicz, Tara Hiltke, Emily Boja, Christopher R. Kinsinger, Mehdi Mesri, Ana I. Robles, Henry Rodriguez, David Mutch, Katherine Fuh, Matthew J. Ellis, Deborah DeLair, Mathangi Thiagarajan, D.R. Mani, Gad Getz, Michael Noble, Alexey I. Nesvizhskii, Pei Wang, Matthew L. Anderson, Douglas A. Levine, Richard D. Smith, Samuel H. Payne, Kelly V. Ruggles, Karin D. Rodland, Li Ding, Bing Zhang, Tao Liu, David Fenyö, Anupriya Agarwal, Meenakshi Anurag, Dmitry Avtonomov, Chet Birger, Michael J. Birrer, Simina M. Boca, William E. Bocik, Uma Borate, Melissa Borucki, Meghan C. Burke, Shuang Cai, Anna Calinawan, Steven A. Carr, Sonya Carter, Patricia Castro, Sandra Cerda, Michelle Chaikin, Daniel W. Chan, Doug Chan, Alyssa Charamut, Feng Chen, Jin Chen, Lijun Chen, Lin S. Chen, David Chesla, Milan G. Chheda, Arul M. Chinnaiyan, Shrabanti Chowdhury, Marcin P. Cieslik, David J. Clark, Sandra Cottingham, Houston Culpepper, Jacob Day, Stephanie De Young, Emek Demir, Saravana Mohan Dhanasekaran, Rajiv Dhir, Marcin J. Domagalski, Peter Dottino, Brian Druker, Elizabeth Duffy, Maureen Dyer, Nathan J. Edwards, Robert Edwards, Kim Elburn, Jayson B. Field, Alicia Francis, Stacey Gabriel, Yifat Geffen, Daniel Geiszler, Michael A. Gillette, Andrew K. Godwin, Pamela Grady, Linda Hannick, Pushpa Hariharan, Sue Hilsenbeck, Barbara Hindenach, Katherine A. Hoadley, Runyu Hong, Galen Hostetter, James J. Hsieh, Yingwei Hu, Michael M. Ittmann, Eric Jaehnig, Scott D. Jewell, Jiayi Ji, Corbin D. Jones, Renee Karabon, Karen A. Ketchum, Munziba Khan, Beom-Jun Kim, Azra Krek, Tanya Krubit, Chandan Kumar-Sinha, Felipe D. Leprevost, Michael Lewis, Qing Kay Li, Yize Li, Hongwei Liu, Jan Lubinski, Weiping Ma, Rashna Madan, Ewa Malc, Anna Malovannaya, Sailaja Mareedu, Sanford P. Markey, Annette Marrero-Oliveras, John Martignetti, Jason McDermott, Peter B. McGarvey, John McGee, Piotr Mieczkowski, Francesmary Modugno, Rebecca Montgomery, Chelsea J. Newton, Gilbert S. Omenn, Amanda G. Paulovich, Amy M. Perou, Francesca Petralia, Paul Piehowski, Larisa Polonskaya, Liqun Qi, Shannon Richey, Karna Robinson, Nancy Roche, Daniel C. Rohrer, Eric E. Schadt, Michael Schnaubelt, Yan Shi, Tara Skelly, Lori J. Sokoll, Xiaoyu Song, Stephen E. Stein, James Suh, Donghui Tan, Darlene Tansil, Guo Ci Teo, Ratna R. Thangudu, Cristina Tognon, Elie Traer, Jeffrey Tyner, Ki Sung Um, Dana R. Valley, Negin Vatanian, Pankaj Vats, Uma Velvulou, Michael Vernon, Liang-Bo Wang, Ying Wang, Alex Webster, Thomas Westbrook, David Wheeler, Jeffrey R. Whiteaker, George D. Wilson, Yuriy Zakhartsev, Robert Zelt, Hui Zhang, Yuping Zhang, Zhen Zhang, Grace Zhao
http://www.ncbi.nlm.nih.gov/pubmed/32059776
Feb 20, 2020
Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma (2019)
David J. Clark, Saravana M. Dhanasekaran, Francesca Petralia, Jianbo Pan, Xiaoyu Song, Yingwei Hu, Felipe da Veiga Leprevost, Boris Reva, Tung-Shing M. Lih, Hui-Yin Chang, Weiping Ma, Chen Huang, Christopher J. Ricketts, Lijun Chen, Azra Krek, Yize Li, Dmitry Rykunov, Qing Kay Li, Lin S. Chen, Umut Ozbek, Suhas Vasaikar, Yige Wu, Seungyeul Yoo, Shrabanti Chowdhury, Matthew A. Wyczalkowski, Jiayi Ji, Michael Schnaubelt, Andy Kong, Sunantha Sethuraman, Dmitry M. Avtonomov, Minghui Ao, Antonio Colaprico, Song Cao, Kyung-Cho Cho, Selim Kalayci, Shiyong Ma, Wenke Liu, Kelly Ruggles, Anna Calinawan, Zeynep H. Gümüş, Daniel Geiszler, Emily Kawaler, Guo Ci Teo, Bo Wen, Yuping Zhang, Sarah Keegan, Kai Li, Feng Chen, Nathan Edwards, Phillip M. Pierorazio, Xi Steven Chen, Christian P. Pavlovich, A. Ari Hakimi, Gabriel Brominski, James J. Hsieh, Andrzej Antczak, Tatiana Omelchenko, Jan Lubinski, Maciej Wiznerowicz, W. Marston Linehan, Christopher R. Kinsinger, Mathangi Thiagarajan, Emily S. Boja, Mehdi Mesri, Tara Hiltke, Ana I. Robles, Henry Rodriguez, Jiang Qian, David Fenyö, Bing Zhang, Li Ding, Eric Schadt, Arul M. Chinnaiyan, Zhen Zhang, Gilbert S. Omenn, Marcin Cieslik, Daniel W. Chan, Alexey I. Nesvizhskii, Pei Wang, Hui Zhang, Abdul Samad Hashimi, Alexander R. Pico, Alla Karpova, Alyssa Charamut, Amanda G. Paulovich, Amy M. Perou, Anna Malovannaya, Annette Marrero-Oliveras, Anupriya Agarwal, Barbara Hindenach, Barbara Pruetz, Beom-Jun Kim, Brian J. Druker, Chelsea J. Newton, Chet Birger, Corbin D. Jones, Cristina Tognon, D.R. Mani, Dana R. Valley, Daniel C. Rohrer, Daniel C. Zhou, Darlene Tansil, David Chesla, David Heiman, David Wheeler, Donghui Tan, Doug Chan, Emek Demir, Ewa Malc, Francesmary Modugno, Gaddy Getz, Galen Hostetter, George D. Wilson, Gerald W. Hart, Heng Zhu, Hongwei Liu, Houston Culpepper, Hua Sun, Hua Zhou, Jacob Day, James Suh, Jasmine Huang, Jason McDermott, Jeffrey R. Whiteaker, Jeffrey W. Tyner, Jennifer Eschbacher, Jin Chen, John McGee, Jun Zhu, Karen A. Ketchum, Karin D. Rodland, Karl Clauser, Karna Robinson, Karsten Krug, Katherine A. Hoadley, Ki Sung Um, Kim Elburn, Kimberly Holloway, Liang-Bo Wang, Lili Blumenberg, Linda Hannick, Liqun Qi, Lori J. Sokoll, MacIntosh Cornwell, Marc Loriaux, Marcin J. Domagalski, Marina A. Gritsenko, Matthew Anderson, Matthew E. Monroe, Matthew J. Ellis, Maureen Dyer, Meenakshi Anurag, Meghan C. Burke, Melissa Borucki, Michael A. Gillette, Michael J. Birrer, Michael Lewis, Michael M. Ittmann, Michael Smith, Michael Vernon, Michelle Chaikin, Milan G. Chheda, Munziba Khan, Nancy Roche, Nathan J. Edwards, Negin Vatanian, Nicole Tignor, Noam Beckmann, Pamela Grady, Patricia Castro, Paul Piehowski, Peter B. McGarvey, Piotr Mieczkowski, Pushpa Hariharan, Qingsong Gao, Rajiv Dhir, Ramani Bhupendra Kothadia, Ratna R. Thangudu, Rebecca Montgomery, Reyka G. Jayasinghe, Richard D. Smith, Robert Edwards, Robert Zelt, Ross Bremner, Ruiyang Liu, Runyu Hong, Sailaja Mareedu, Samuel H. Payne, Sandra Cottingham, Sanford P. Markey, Scott D. Jewell, Shalin Patel, Shankha Satpathy, Shannon Richey, Sherri R. Davies, Shuang Cai, Simina M. Boca, Snehal Patil, Sohini Sengupta, Sonya Carter, Stacey Gabriel, Stefani N. Thomas, Stephanie De Young, Stephen E. Stein, Steven A. Carr, Steven M. Foltz, Sue Hilsenbeck, Tanya Krubit, Tao Liu, Tara Skelly, Thomas Westbrook, Uma Borate, Uma Velvulou, Vladislav A. Petyuk, William E. Bocik, Xi Chen, Yan Shi, Yifat Geffen, Yihao Lu, Ying Wang, Yosef Maruvka, Zhi Li, Zhiao Shi, Zhidong Tu
http://www.ncbi.nlm.nih.gov/pubmed/31675502
Feb 20, 2020